I am an INRIA PhD student in BONSAI bioinformatics research team at University of Lille 1, France. I study de novo genome sequencing and assembly, with third generation sequencing technology.

Scientific work

Scientific tools

  • Assembly_report: an assembly analyzer and debugger for Canu and mini{map|asm}
  • paf2gfa: convert overlap list (in Pairwise Alignment Format) to overlap graph (in Graphical Format Assembly GFA1)
  • yacrd: using all-against-all read mapping for chimeras read detection

Side project